Thank you for the suggestion, Sean. As Bird mentioned I'd like to debayer prior to Registax if I can find a good way to do it. I've found it works great when I can debayer, convert to BMP, and then run the footage through PPMCentere (ninox) and RGBSplit first, as I get a centered and ranked set of images that are split into R,G, and B folders. This allows me to stack the R,G, and B channels separately in Registax which has been giving me better results. I've noticed for my seeing conditions, the blue channel always requires more wavelet sharpening, and usually a larger stack size to turn out decent as compared to the red and green channels.

I'm relatively sure the poor blue channel is due to seeing conditions. I think I know now why they call my area the Great Smoky Mountains!