1.) I feel like I should be seeing the 3 mirror clips here instead of just 2 out of the 3 when I look through the cheshire.
2.) Is all of the primary mirror being presented to the secondary, or is it somehow being cut off from the secondary not being in correct position?
3.) I'm not sure what's expected. If there's an issue, I'm not sure what else I should do since it currently looks like the cheshire collimator is in center alignment with the primary (see picture).
4.) There's also the center screw for the secondary but I'm not sure I should be messing with that. (fwiw the laser collimator also looks fine)
5.) Or, is this simply the expected view from the cheshire and I'm thinking too much about it?
1.) You should see all 3 mirror clips, but it's not critical.
2.) I'm not sure. It depends on the location of the combination tool pupil relative to the focal plane. What combination tool are you using and how far above the focuser is the tool pupil?
3.) I can't see the primary mirror center marker, but I'm assuming it's inside the bright Cheshire ring. I've annotated the center marker in red and the Cheshire ring in yellow.
4.) The center screw behind the secondary mirror sets the offset of the secondary mirror. Your secondary mirror looks like it has a bit too much offset. To reduce the offset, the three secondary mirror tilt adjustment screws need to be loosened equally and the center screw needs to be tightened. The solid line green circle shows the secondary mirror placement error and the dashed green circle shows the optimal placement. When the offset is correct, the reflection of the secondary mirror (violet circle is optimal) will also show less offset.
5.) It is not the expected "optimal" view, but as I noted in the response to 1.), the error is unlikely to impact the scope's image performance. You can use this collimation "as is"--and save the secondary mirror placement error for a rainy day (if you can adjust the combination tool pupil enough to see all three of the outer circles:
the bottom edge of the combination tool (light blue circle),
the actual edge of the secondary mirror (green circle), and
the reflected edge of the primary mirror (red circle).
You can also make the actual edge of the secondary mirror more visible by placing a sheet of white copy paper behind the secondary mirror against the inside of the tube wall opposite the focuser.