I do think I misunderstood, so I apologize for that. Calibration of your polar scope may not be necessary, and it's a step that is "separate" from polar alignment via polar scope.
Polar alignment is covered in pdf pages 21-23.
The polar scope reticle rotates with the mount as it rotates in right ascension. When you loosen the R.A. clutch (large black ring on the opposite end of the polar scope eyepiece - the "front" of the R.A. housing) and rotate the R.A. head, the polar reticle rotates. THAT's how you adjust the reticle so that 0 is at 12 o'clock, 6 is at 6, etc. (The three little screws do not rotate the reticle.) Once you've oriented/rotated the mount housing (and polar reticle) to match a clock (0/12 up; 6 down), lock the R.A. clutch back down again. You're simply establishing a "zeroed clock" and synchronizing the reticle with the app (assuming you have and are using the app).
Now, it's a matter of refining your mount's alignment to the North Celestial Pole by using the altitude and azimuth knobs to move the mount so that Polaris's position in the reticle matches the black dot's position in the app (which will depend on your latitude, date, and time). -Again, you'll be following the "workflow" of the Polar Alignment procedure (pages 21-23).
Let me know if the above makes sense. If need be, we can clarify other details with additional babble. 
Best wishes.
Dan
Edited by MisterDan, 24 May 2025 - 09:09 PM.